PUBLICATIONS:

Kiel C., Verschueren E., Yang JS, Serrano L. Integration of protein abundance and structure data reveals competition in the ErbB signaling network. Sci Signal., 2013 Dec 17;6(306):ra109. doi: 10.1126/scisignal.2004560.

Park JH*, Park S*, Yang JS, Kwon OS, Kim S+, Jang SK+.: Discovery of Cellular Proteins Required for the Early Steps of HCV Infection Using Integrative Genomics., PLoS One. 2013 Apr 12;8(4):e60333. Print 2013. (*equal contribution)

Yang JS, Kim J, Park S, Jeon J, Shin YE, Kim S.: Spatial and functional organization of mitochondrial protein network., Scientific Reports 2013;3:1403. doi: 10.1038/srep01403.   

Seo SW*, Yang JS*, Kim I, Yang J, Min BE, Kim S+, Jung GY+: Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency, Metabolic Engineering

Available online 17 November 2012 (*equal contribution)

Park S, Yang JS, Kim J, Shin YE, Hwang J, Park J, Jang SK, Kim S: Evolutionary history of human disease genes reveals phenotypic connections and comorbidity among genetic diseases, Scientific Reports 2, Article number: 757 

Yang JS, Campagna A, Delgado J, Vanhee P, Serrano L+, Kiel C+: SAPIN: Structural Analysis for Protein Interaction Networks, Bioinformatics, 2012 Sept

Yang JS*, Seo SW*, Jang S, Jung GY+, Kim S+: Rational Engineering of Enzyme Allosteric Regulation through Sequence Evolution Analysis, PLoS Comput Biol. 2012 July; 8(7): e1002612. doi:10.1371/journal.pcbi.1002612 (*equal contribution)

Kim J, Kim I, Yang JS, Shin YE, Hwang J, Kim S: Rewiring of PDZ domain-ligand interaction network contributed to eukaryotic evolution, PLoS Genet. 2012 Feb;8(2):e1002510. Epub 2012 Feb 9. (PMID: 22346764)

Choi DS* , Yang JS*, Choi EJ*, Jang SC, Park S,  Kim OY, Hwang D, Kim KP, Kim YK, Kim S+, Gho YS+: The protein interaction network of extracellular vesicles derived from human colorectal cancer cells, J Proteome Res. 2012 Feb 3;11(2):1144-51. Epub 2012 Jan 9. (PMID: 22149170) (*equal contribution)

Cho NH, Cheong TC, Min JH, Wu JH, Lee SJ, Kim D, Yang JS, Kim S, Kim YK, Seong SY: A multifunctional core-shell nanoparticle for dendritic cell-based cancer immunotherapy. Nature Nanotechnology 2011;6(10). (PMID: 21909083) 

Yang JS, Nam HJ, Seo M, Han SK, Choi Y, Nam HG, Lee SJ, Kim S. OASIS: Online Application for the Survival Analysis of Lifespan Assays Performed in Aging Research, PLoS ONE 2011;6(8):e23525. (PMID: 21858155)

Jeon J, Jeong JH, Baek JH, Koo HJ, Park WH, Yang JS, Yu MH, Kim S, Pak YK: Network clustering revealed the systemic alterations of mitochondrial protein expression. PLoS Computational Biology 2011, 7(6):e1002093 (PMID: 21738461)

Park S, Yang JS, Shin YE, Park J, Jang SK, et al. (2011) Protein localization as a principal feature of the etiology and comorbidity of genetic diseases. Mol Syst Biol 7: 494. (PMID: 21613983)

Jeon J, Nam HJ, Choi Y, Yang JS, Hwang J, Kim S: Molecular evolution of protein conformational changes revealed by a network of evolutionarily-coupled residues. Mol Biol Evol 2011. (PMID: 21470969)

Yang JS*, Kim JT*, Jeon J, Park HS, Kang GH, Park KS, Lee HK, Kim S, Cho YM: Changes in hepatic gene expression upon oral administration of taurine-conjugated ursodeoxycholic acid in ob/ob mice. PLoS One 2010, 5(11):e13858. (*equal contribution) (PMID: 21079772)

Lee GH, Ahn T, Kim DS, Park SJ, Lee YC, Yoo WH, Jung SJ, Yang JS, Kim S, Muhlrad A et al: Bax inhibitor 1 increases cell adhesion through actin polymerization: involvement of calcium and actin binding. Mol Cell Biol 2010, 30(7):1800-1813. (PMID: 20123969)

Choi YS, Han SK, Kim J, Yang JS, Jeon J, Ryu SH, Kim S: ConPlex: a server for the evolutionary conservation analysis of protein complex structures. Nucleic Acids Res 2010, 38(Web Server issue):W450-456. (PMID: 20435678)

Cho BA, Cho NH, Min CK, Kim SY, Yang JS, Lee JR, Jung JW, Lee WC, Kim K, Lee MK et al: Global gene expression profile of Orientia tsutsugamushi. Proteomics 2010, 10(8):1699-1715. (PMID: 20186754)

Park S, Yang JS, Jang SK, Kim S: Construction of functional interaction networks through consensus localization predictions of the human proteome. J Proteome Res 2009, 8(7):3367-3376. (PMID: 19415893)

Jeon J, Yang JS, Kim S: Integration of evolutionary features for the identification of functionally important residues in major facilitator superfamily transporters. PLoS Comput Biol 2009, 5(10):e1000522. (PMID: 19798434)

Choi YS, Yang JS, Choi Y, Ryu SH, Kim S: Evolutionary conservation in multiple faces of protein interaction. Proteins 2009, 77(1):14-25. (PMID: 19350617)

Min CK, Yang JS, Kim S, Choi MS, Kim IS, Cho NH: Genome-based construction of the metabolic pathways of Orientia tsutsugamushi and comparative analysis within the Rickettsiales order. Comp Funct Genomics 2008:623145. (PMID: 18528528)

Min CK, Bang SY, Cho BA, Choi YH, Yang JS, Lee SH, Seong SY, Kim KW, Kim S, Jung JU et al: Role of amphipathic helix of a herpesviral protein in membrane deformation and T cell receptor downregulation. PLoS Pathog 2008, 4(11):e1000209. (PMID: 19023411)

Choi S, Jeon J, Yang JS, Kim S: Common occurrence of internal repeat symmetry in membrane proteins. Proteins 2008, 71(1):68-80. (PMID: 17932930)

Kim YK, Park HW, Yang JS, Oh SY, Chang YS, Shin ES, Lee JE, Kim S, Gho YS, Cho SH et al: Association and functional relevance of E237G, a polymorphism of the high-affinity immunoglobulin E-receptor beta chain gene, to airway hyper-responsiveness. Clin Exp Allergy 2007, 37(4):592-598. (PMID: 17430357)